#!/bin/tcsh
#SBATCH --time=1:00:00 # walltime, abbreviated by -t
#SBATCH --nodes=1      # number of cluster nodes, abbreviated by -N
#SBATCH -o slurm-%j.out-%N # name of the stdout, using the job number (%j) and the first node (%N)
#SBATCH --ntasks=1    # number of MPI tasks, abbreviated by -n
# additional information for allocated clusters
#SBATCH --account=baggins     # account - abbreviated by -A
#SBATCH --partition=kingspeak  # partition, abbreviated by -p

# just in case purge the old modules and load Matlab module
module purge
module load matlab

# directory with the Matlab inputs, must contain run_matlab.m
set DATADIR="/uufs/chpc.utah.edu/common/home/u0123456/matlab_input_files"
# scratch directory where the Matlab is run
set SCRDIR="/scratch/serial/u0123456/matlab_run1"

# make scratch dir, copy input data there and cd to it
mkdir -p $SCRDIR
cp  $DATADIR/* $SCRDIR
cd $SCRDIR

# run matlab program via the run_matlab script
matlab -nodisplay -r run_matlab -logfile matlab_batch.log

# create results directory in home DATADIR
mkdir $DATADIR/result
# copy results from scratch to the result dir - replace matlab_outputs*
# with your own results files
cp -r matlab_outputs* $DATADIR/result